If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ), 'gf_id' => 'HOM05D000613', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000613' ), 'data_identifier' => 'HOM05D000613', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000613', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31430' => 'bna', 'A01p35370' => 'bna', 'A02p05170' => 'bna', 'A02p15010' => 'bna', 'A03p41090' => 'bna', 'A03p67710' => 'bna', 'A04p00280' => 'bna', 'A04p21110' => 'bna', 'A07p08770' => 'bna', 'A07p32010' => 'bna', 'A09p54920' => 'bna', 'A10p20650' => 'bna', 'Aa31LG10G16950' => 'aar', 'Aa31LG11G10680' => 'aar', 'Aa31LG5G8240' => 'aar', 'Aa31LG8G10180' => 'aar', 'Aa31LG8G11980' => 'aar', 'Aa31LG8G5940' => 'aar', 'Aa31LG8G5950' => 'aar', 'Actinidia00501' => 'ach', 'Actinidia09150' => 'ach', 'Actinidia14899' => 'ach', 'Actinidia16660' => 'ach', 'Actinidia23473' => 'ach', 'Actinidia25366' => 'ach', 'Actinidia35452' => 'ach', 'Actinidia40193' => 'ach', 'Ah.03g137550' => 'amhyb', 'Ah.07g205600' => 'amhyb', 'Ah.12g056460' => 'amhyb', 'AL2G27320' => 'aly', 'AL3G32530' => 'aly', 'AL3G38310' => 'aly', 'AL4G22540' => 'aly', 'AL5G45940' => 'aly', 'AL6G30400' => 'aly', 'AL7G28550' => 'aly', 'Aqoxy2G01362' => 'aox', 'Aqoxy2G03260' => 'aox', 'Aqoxy3G00279' => 'aox', 'Aqoxy4G00843' => 'aox', 'Aqoxy4G00845' => 'aox', 'arahy.Tifrunner.gnm1.ann1.013JYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5HJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WB51G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B80SH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F020BL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UA796T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU6K4M' => 'arhy', 'AT1G25410' => 'ath', 'AT1G68460' => 'ath', 'AT2G27760' => 'ath', 'AT3G19160' => 'ath', 'AT3G23630' => 'ath', 'AT3G63110' => 'ath', 'AT4G24650' => 'ath', 'AT5G19040' => 'ath', 'ATR0626G191' => 'atr', 'ATR1096G040' => 'atr', 'ATR1125G060' => 'atr', 'Atru.chr11.111' => 'acertr', 'Atru.chr3.3359' => 'acertr', 'Atru.chr3.3360' => 'acertr', 'Atru.chr4.2579' => 'acertr', 'Atru.chr4.2602' => 'acertr', 'Atru.chr4.2603' => 'acertr', 'Atru.chr5.1384' => 'acertr', 'Atru.chr5.2943' => 'acertr', 'Atru.chr5.2944' => 'acertr', 'Atru.chr5.2946' => 'acertr', 'AUR62009805' => 'cqu', 'AUR62014109' => 'cqu', 'AUR62030078' => 'cqu', 'AUR62035204' => 'cqu', 'AUR62036807' => 'cqu', 'AUR62038117' => 'cqu', 'AUR62038224' => 'cqu', 'AUR62040283' => 'cqu', 'AUR62041244' => 'cqu', 'AUR62043078' => 'cqu', 'BcaB03g15417' => 'bca', 'BcaB04g19029' => 'bca', 'BcaB04g20433' => 'bca', 'BcaB04g20718' => 'bca', 'BcaB04g20719' => 'bca', 'BcaB05g23359' => 'bca', 'BcaB05g24383' => 'bca', 'BcaB06g26518' => 'bca', 'BcaB06g28166' => 'bca', 'BcaB08g36624' => 'bca', 'BcaC01g03643' => 'bca', 'BcaC02g08231' => 'bca', 'BcaC03g13630' => 'bca', 'BcaC03g14950' => 'bca', 'BcaC03g14951' => 'bca', 'BcaC04g18625' => 'bca', 'BcaC06g35550' => 'bca', 'BcaC07g40789' => 'bca', 'BcaC07g42709' => 'bca', 'BcaC08g45970' => 'bca', 'BcaC09g48875' => 'bca', 'BcaC09g48876' => 'bca', 'BolC1t03962H' => 'bol', 'BolC1t04456H' => 'bol', 'BolC2t06930H' => 'bol', 'BolC2t08560H' => 'bol', 'BolC3t17310H' => 'bol', 'BolC4t24543H' => 'bol', 'BolC4t27227H' => 'bol', 'BolC6t38863H' => 'bol', 'BolC7t41855H' => 'bol', 'BolC8t51361H' => 'bol', 'BolC9t58613H' => 'bol', 'BraA01t03269Z' => 'bra', 'BraA01t03618Z' => 'bra', 'BraA02t05477Z' => 'bra', 'BraA02t06568Z' => 'bra', 'BraA03t13266Z' => 'bra', 'BraA04t15747Z' => 'bra', 'BraA04t17680Z' => 'bra', 'BraA07t28666Z' => 'bra', 'BraA07t30831Z' => 'bra', 'BraA09t40902Z' => 'bra', 'BraA10t44128Z' => 'bra', 'C01p40060' => 'bna', 'C01p44880' => 'bna', 'C02p10260' => 'bna', 'C02p24640' => 'bna', 'C03p50180' => 'bna', 'C04p30110' => 'bna', 'C04p56910' => 'bna', 'C06p37600' => 'bna', 'C07p13600' => 'bna', 'C08p37830' => 'bna', 'C09p57440' => 'bna', 'CAN.G133.4' => 'can', 'CAN.G1574.4' => 'can', 'CAN.G199.43' => 'can', 'CAN.G463.6' => 'can', 'CAN.G609.10' => 'can', 'CAN.G610.74' => 'can', 'CAN.G644.22' => 'can', 'CAN.G667.7' => 'can', 'CAN.G719.2' => 'can', 'CAN.G719.3' => 'can', 'CAN.G719.4' => 'can', 'CAN.G780.5' => 'can', 'CAN.G869.14' => 'can', 'CANSAT25G0721' => 'cansat', 'CANSAT54G1868' => 'cansat', 'CANSAT78G2158' => 'cansat', 'CARHR061240' => 'chi', 'CARHR094560' => 'chi', 'CARHR099580' => 'chi', 'CARHR120460' => 'chi', 'CARHR173420' => 'chi', 'CARHR193950' => 'chi', 'Carub.0001s2509' => 'cru', 'Carub.0002s1497' => 'cru', 'Carub.0003s1898' => 'cru', 'Carub.0003s2386' => 'cru', 'Carub.0004s0851' => 'cru', 'Carub.0005s2977' => 'cru', 'Carub.0006s1736' => 'cru', 'Carub.0007s1641' => 'cru', 'Ca_00646_v3' => 'car', 'Ca_03057_v3' => 'car', 'Ca_09768_v3' => 'car', 'Ca_11167_v3' => 'car', 'Ca_19380_v3' => 'car', 'Ca_21590_v3' => 'car', 'Cc01_g09670' => 'ccan', 'Cc02_g17870' => 'ccan', 'Cc03_g03080' => 'ccan', 'Cc11_g10030' => 'ccan', 'CDE01G0397' => 'cde', 'CDE02G1394' => 'cde', 'CDE05G1315' => 'cde', 'CDE05G3426' => 'cde', 'CDE06G0976' => 'cde', 'CDE06G2416' => 'cde', 'CDE08G1328' => 'cde', 'Cfa006115' => 'cfa', 'Cfa010073' => 'cfa', 'Cfa015579' => 'cfa', 'Cfa018586' => 'cfa', 'Cfa023884' => 'cfa', 'Cfa025767' => 'cfa', 'Ciclev10005414m.g' => 'ccl', 'Ciclev10015747m.g' => 'ccl', 'Ciclev10021361m.g' => 'ccl', 'Ciclev10025914m.g' => 'ccl', 'Ciclev10028244m.g' => 'ccl', 'Ciclev10029953m.g' => 'ccl', 'CiPaw.01G159700' => 'cil', 'CiPaw.02G092100' => 'cil', 'CiPaw.07G093400' => 'cil', 'CiPaw.08G104000' => 'cil', 'CiPaw.08G105200' => 'cil', 'CiPaw.13G140000' => 'cil', 'CiPaw.15G086300' => 'cil', 'ClCG01G012600' => 'cla', 'ClCG02G005270' => 'cla', 'ClCG05G022650' => 'cla', 'ClCG06G005800' => 'cla', 'ClCG07G000200' => 'cla', 'ClCG08G005030' => 'cla', 'ClCG09G006930' => 'cla', 'COL.COLO4_09130' => 'col', 'COL.COLO4_19960' => 'col', 'COL.COLO4_27537' => 'col', 'COL.COLO4_27568' => 'col', 'Cpa.g.sc1.30' => 'cpa', 'Cpa.g.sc16.27' => 'cpa', 'Cpa.g.sc20.90' => 'cpa', 'Cpa.g.sc47.71' => 'cpa', 'Cpa.g.sc47.73' => 'cpa', 'Cpa.g.sc64.167' => 'cpa', 'CsaV3_1G014570' => 'csa', 'CsaV3_3G013770' => 'csa', 'CsaV3_5G034390' => 'csa', 'CsaV3_6G003310' => 'csa', 'CsaV3_6G018570' => 'csa', 'CsaV3_7G023250' => 'csa', 'CsaV3_7G028650' => 'csa', 'CSS0003027' => 'camsi', 'CSS0005335' => 'camsi', 'CSS0006991' => 'camsi', 'CSS0010471' => 'camsi', 'CSS0018660' => 'camsi', 'CSS0040585' => 'camsi', 'CSS0044985' => 'camsi', 'CSS0048745' => 'camsi', 'DCAR_002744' => 'dca', 'DCAR_002745' => 'dca', 'DCAR_005848' => 'dca', 'DCAR_012174' => 'dca', 'DCAR_012465' => 'dca', 'DCAR_018410' => 'dca', 'DCAR_023653' => 'dca', 'DCAR_024579' => 'dca', 'DCAR_026736' => 'dca', 'DCAR_027150' => 'dca', 'DCAR_030162' => 'dca', 'Dinv02663' => 'din', 'Dinv11252' => 'din', 'Dinv12513' => 'din', 'Dinv21075' => 'din', 'Dinv29436' => 'din', 'Dinv29872' => 'din', 'Dinv31632' => 'din', 'Dinv32954' => 'din', 'Dinv38392' => 'din', 'Dinv42090' => 'din', 'Dinv44478' => 'din', 'Duzib133G0725' => 'dzi', 'Duzib150G1136' => 'dzi', 'Duzib151G0102' => 'dzi', 'Duzib211G0239' => 'dzi', 'Duzib212G0212' => 'dzi', 'Duzib268G0072' => 'dzi', 'Duzib268G0612' => 'dzi', 'Duzib268G0906' => 'dzi', 'ECA234G4079' => 'eca', 'ECA236G0106' => 'eca', 'ECA240G4504' => 'eca', 'ECA246G1376' => 'eca', 'ECA247G2170' => 'eca', 'ECA248G0389' => 'eca', 'ECA248G3409' => 'eca', 'EL10Ac3g06345' => 'bvu', 'EL10Ac6g14298' => 'bvu', 'EL10Ac6g14387' => 'bvu', 'EL10Ac7g15781' => 'bvu', 'EL10Ac7g17219' => 'bvu', 'Eucgr.B01146' => 'egr', 'Eucgr.C02668' => 'egr', 'Eucgr.C02671' => 'egr', 'Eucgr.C02674' => 'egr', 'Eucgr.C02679' => 'egr', 'Eucgr.C02680' => 'egr', 'Eucgr.C02681' => 'egr', 'Eucgr.C02687' => 'egr', 'Eucgr.C02688' => 'egr', 'Eucgr.C02690' => 'egr', 'Eucgr.G00473' => 'egr', 'Eucgr.G01887' => 'egr', 'Eucgr.G02313' => 'egr', 'Eucgr.H03602' => 'egr', 'Eucgr.J00445' => 'egr', 'Eucgr.J00446' => 'egr', 'Eucgr.K03385' => 'egr', 'FAN07G1136' => 'fan', 'FAN07G1840' => 'fan', 'FAN11G1257' => 'fan', 'FAN11G1480' => 'fan', 'FAN11G2444' => 'fan', 'FAN11G3077' => 'fan', 'FAN12G0069' => 'fan', 'FAN12G1416' => 'fan', 'FAN12G1927' => 'fan', 'FAN15G2303' => 'fan', 'FAN16G0170' => 'fan', 'FAN16G2002' => 'fan', 'FAN16G2632' => 'fan', 'FAN17G0647' => 'fan', 'FAN17G1938' => 'fan', 'FAN17G2173' => 'fan', 'FAN17G2434' => 'fan', 'FAN17G2858' => 'fan', 'FAN17G2947' => 'fan', 'FAN20G1685' => 'fan', 'FAN21G2708' => 'fan', 'FAN22G0901' => 'fan', 'FAN22G2068' => 'fan', 'FAN24G0285' => 'fan', 'FAN25G2504' => 'fan', 'FAN25G2970' => 'fan', 'FAN25G3043' => 'fan', 'FAN27G3376' => 'fan', 'FvH4_2g23840' => 'fve', 'FvH4_3g05590' => 'fve', 'FvH4_3g17710' => 'fve', 'FvH4_3g29650' => 'fve', 'FvH4_4g14440' => 'fve', 'FvH4_4g27230' => 'fve', 'Glyma.02G148600' => 'gma', 'Glyma.03G151800' => 'gma', 'Glyma.07G256700' => 'gma', 'Glyma.08G364900' => 'gma', 'Glyma.10G025300' => 'gma', 'Glyma.10G273500' => 'gma', 'Glyma.11G188100' => 'gma', 'Glyma.12G086300' => 'gma', 'Glyma.13G209101' => 'gma', 'Glyma.15G103800' => 'gma', 'Glyma.17G017400' => 'gma', 'Glyma.17G045700' => 'gma', 'Glyma.18G297251' => 'gma', 'Glyma.18G297300' => 'gma', 'Glyma.19G154400' => 'gma', 'Glyma.20G116500' => 'gma', 'Gohir.A04G098300' => 'ghi', 'Gohir.A05G321400' => 'ghi', 'Gohir.A08G069400' => 'ghi', 'Gohir.A08G222900' => 'ghi', 'Gohir.A09G093800' => 'ghi', 'Gohir.A10G114600' => 'ghi', 'Gohir.A11G121500' => 'ghi', 'Gohir.D04G137900' => 'ghi', 'Gohir.D05G323600' => 'ghi', 'Gohir.D08G077700' => 'ghi', 'Gohir.D08G243200' => 'ghi', 'Gohir.D09G093500' => 'ghi', 'Gohir.D10G153100' => 'ghi', 'Gohir.D11G126700' => 'ghi', 'Gohir.D11G137366' => 'ghi', 'Gohir.D11G137432' => 'ghi', 'Gorai.004G082600' => 'gra', 'Gorai.004G259100' => 'gra', 'Gorai.006G110100' => 'gra', 'Gorai.007G135400' => 'gra', 'Gorai.007G147200' => 'gra', 'Gorai.009G347400' => 'gra', 'Gorai.011G169700' => 'gra', 'Gorai.012G122700' => 'gra', 'GSVIVG01011107001' => 'vvi', 'GSVIVG01011886001' => 'vvi', 'GSVIVG01017885001' => 'vvi', 'GSVIVG01025775001' => 'vvi', 'GSVIVG01031386001' => 'vvi', 'GSVIVG01034295001' => 'vvi', 'HanXRQChr01g0002341' => 'han', 'HanXRQChr03g0063821' => 'han', 'HanXRQChr03g0072551' => 'han', 'HanXRQChr03g0089021' => 'han', 'HanXRQChr03g0089051' => 'han', 'HanXRQChr10g0282851' => 'han', 'HanXRQChr11g0345911' => 'han', 'HanXRQChr12g0380671' => 'han', 'HanXRQChr15g0466641' => 'han', 'HanXRQChr16g0529411' => 'han', 'HanXRQChr17g0552331' => 'han', 'HanXRQChr17g0567541' => 'han', 'Haze_00966' => 'cav', 'Haze_04735' => 'cav', 'Haze_17494' => 'cav', 'Haze_23439' => 'cav', 'Haze_27580' => 'cav', 'Hma1.2p1_0066F.1_g036720' => 'hma', 'Hma1.2p1_0189F.1_g082590' => 'hma', 'Hma1.2p1_0257F.1_g103710' => 'hma', 'Hma1.2p1_0695F.1_g204450' => 'hma', 'Hma1.2p1_1037F.1_g250640' => 'hma', 'HPP92_006396' => 'vpl', 'HPP92_009047' => 'vpl', 'HPP92_011527' => 'vpl', 'HPP92_011814' => 'vpl', 'HPP92_011815' => 'vpl', 'HPP92_021596' => 'vpl', 'HPP92_023128' => 'vpl', 'HPP92_027125' => 'vpl', 'HPP92_027824' => 'vpl', 'HPP92_027825' => 'vpl', 'Hund18732' => 'sun', 'Hund20730' => 'sun', 'Lalb_Chr02g0142841' => 'lal', 'Lalb_Chr02g0145901' => 'lal', 'Lalb_Chr03g0027961' => 'lal', 'Lalb_Chr04g0254701' => 'lal', 'Lalb_Chr06g0174631' => 'lal', 'Lalb_Chr07g0177341' => 'lal', 'Lalb_Chr12g0196231' => 'lal', 'Lalb_Chr12g0196241' => 'lal', 'Lalb_Chr20g0118411' => 'lal', 'Lalb_Chr21g0306511' => 'lal', 'Lalb_Chr21g0308881' => 'lal', 'Lj1C45T20' => 'lonja', 'Lj2A992T23' => 'lonja', 'Lj2P1176T24' => 'lonja', 'Lj3g0004331' => 'lja', 'Lj3P1014T35' => 'lonja', 'Lj4g0027050' => 'lja', 'Lj5A200T61' => 'lonja', 'Lj5g0001355' => 'lja', 'Lj5g0025235' => 'lja', 'Lj6A756T66' => 'lonja', 'Lj6g0020506' => 'lja', 'Lj6P565T26' => 'lonja', 'Lsat_1_v5_gn_1_62120' => 'lsa', 'Lsat_1_v5_gn_2_39840' => 'lsa', 'Lsat_1_v5_gn_3_58960' => 'lsa', 'Lsat_1_v5_gn_4_15981' => 'lsa', 'Lsat_1_v5_gn_5_187320' => 'lsa', 'Lsat_1_v5_gn_8_15501' => 'lsa', 'Lsat_1_v5_gn_8_55941' => 'lsa', 'Lsat_1_v5_gn_9_4220' => 'lsa', 'Manes.01G209100' => 'mes', 'Manes.03G185000' => 'mes', 'Manes.05G074300' => 'mes', 'Manes.06G067100' => 'mes', 'Manes.11G158700' => 'mes', 'Manes.14G103300' => 'mes', 'Manes.15G022800' => 'mes', 'Manes.15G148500' => 'mes', 'MBI09_g18089_MAGBIO' => 'mbi', 'MBI16_g32673_MAGBIO' => 'mbi', 'MBI17_g12010_MAGBIO' => 'mbi', 'MBI17_g19797_MAGBIO' => 'mbi', 'MCO11G095' => 'mco', 'MD00G1084500' => 'mdo', 'MD03G1136100' => 'mdo', 'MD03G1267900' => 'mdo', 'MD11G1288800' => 'mdo', 'MD13G1040600' => 'mdo', 'MD13G1182800' => 'mdo', 'MD16G1041700' => 'mdo', 'MD16G1183400' => 'mdo', 'Medtr1g072540' => 'mtr', 'Medtr1g110590' => 'mtr', 'Medtr2g022140' => 'mtr', 'Medtr2g075100' => 'mtr', 'Medtr3g011570' => 'mtr', 'Medtr3g011590' => 'mtr', 'Medtr3g019820' => 'mtr', 'Medtr3g019900' => 'mtr', 'Medtr3g019930' => 'mtr', 'Medtr3g019980' => 'mtr', 'Medtr3g020100' => 'mtr', 'Medtr3g020155' => 'mtr', 'Medtr3g020740' => 'mtr', 'Medtr3g020760' => 'mtr', 'Medtr4g055110' => 'mtr', 'Medtr4g117330' => 'mtr', 'Medtr6g045287' => 'mtr', 'Medtr6g045293' => 'mtr', 'Medtr7g007180' => 'mtr', 'Medtr7g007190' => 'mtr', 'Medtr7g024230' => 'mtr', 'Medtr7g024250' => 'mtr', 'Medtr7g028880' => 'mtr', 'Medtr7g407170' => 'mtr', 'MELO3C004783.2' => 'cme', 'MELO3C006571.2' => 'cme', 'MELO3C011541.2' => 'cme', 'MELO3C012255.2' => 'cme', 'MELO3C012565.2' => 'cme', 'MELO3C015852.2' => 'cme', 'MELO3C021401.2' => 'cme', 'Migut.D00273' => 'egut', 'Migut.D02360' => 'egut', 'Migut.E00350' => 'egut', 'Migut.G00264' => 'egut', 'Migut.L01058' => 'egut', 'Migut.N00150' => 'egut', 'MSTRG.2230' => 'ama', 'Nitab4.5_0000057g0220' => 'nta', 'Nitab4.5_0000267g0090' => 'nta', 'Nitab4.5_0000759g0010' => 'nta', 'Nitab4.5_0000759g0070' => 'nta', 'Nitab4.5_0001028g0160' => 'nta', 'Nitab4.5_0001690g0020' => 'nta', 'Nitab4.5_0002386g0030' => 'nta', 'Nitab4.5_0003715g0090' => 'nta', 'Nitab4.5_0005123g0030' => 'nta', 'Nitab4.5_0005746g0020' => 'nta', 'Nitab4.5_0006089g0050' => 'nta', 'Nitab4.5_0007001g0010' => 'nta', 'Nitab4.5_0008989g0010' => 'nta', 'Nitab4.5_0008989g0060' => 'nta', 'Nitab4.5_0011417g0040' => 'nta', 'Nitab4.5_0011558g0010' => 'nta', 'Nitab4.5_0011810g0010' => 'nta', 'Nn1g02159' => 'nnu', 'Nn1g02747' => 'nnu', 'Nn1g04693' => 'nnu', 'Nn1g06670' => 'nnu', 'Nn2g15563' => 'nnu', 'Nn3g17863' => 'nnu', 'Nn4g23864' => 'nnu', 'Nn4g25727' => 'nnu', 'Nn4g25728' => 'nnu', 'Nn4g26190' => 'nnu', 'Nn5g28289' => 'nnu', 'Nn6g35021' => 'nnu', 'Nn7g38261' => 'nnu', 'Oeu006220.1' => 'oeu', 'Oeu010297.1' => 'oeu', 'Oeu010508.1' => 'oeu', 'Oeu013233.1' => 'oeu', 'Oeu027449.1' => 'oeu', 'Oeu037680.1' => 'oeu', 'Oeu047880.1' => 'oeu', 'Oeu050191.2' => 'oeu', 'Oeu057717.1' => 'oeu', 'Oeu058280.1' => 'oeu', 'Oeu060374.1' => 'oeu', 'Os01g0688300' => 'osa', 'Os01g0968700' => 'osa', 'Os03g0356900' => 'osa', 'Os03g0358900' => 'osa', 'Os03g0810100' => 'osa', 'Os05g0311801' => 'osa', 'Os05g0551700' => 'osa', 'Os07g0190150' => 'osa', 'Os07g0211700' => 'osa', 'Peaxi162Scf00002g05433' => 'pax', 'Peaxi162Scf00016g00911' => 'pax', 'Peaxi162Scf00016g00945' => 'pax', 'Peaxi162Scf00095g00121' => 'pax', 'Peaxi162Scf00106g00224' => 'pax', 'Peaxi162Scf00209g00126' => 'pax', 'Peaxi162Scf00570g00045' => 'pax', 'Peaxi162Scf00753g00063' => 'pax', 'Peaxi162Scf02530g00001' => 'pax', 'PGR004G1078' => 'pgr', 'PGR031G1191' => 'pgr', 'PGR042G0431' => 'pgr', 'PGR044G1802' => 'pgr', 'PGR083G0907' => 'pgr', 'PGR119G0205' => 'pgr', 'PGR119G0596' => 'pgr', 'PGSC0003DMG400000957' => 'stu', 'PGSC0003DMG400006008' => 'stu', 'PGSC0003DMG400010282' => 'stu', 'PGSC0003DMG400014561' => 'stu', 'PGSC0003DMG400014562' => 'stu', 'PGSC0003DMG400014563' => 'stu', 'PGSC0003DMG400026541' => 'stu', 'PGSC0003DMG400026772' => 'stu', 'PGSC0003DMG400026805' => 'stu', 'PGSC0003DMG400033116' => 'stu', 'PGSC0003DMG400034473' => 'stu', 'PGSC0003DMG400034585' => 'stu', 'PGSC0003DMG400034593' => 'stu', 'PGSC0003DMG400034602' => 'stu', 'PGSC0003DMG400035116' => 'stu', 'PGSC0003DMG400035440' => 'stu', 'PGSC0003DMG400035835' => 'stu', 'PGSC0003DMG400035881' => 'stu', 'PGSC0003DMG400036132' => 'stu', 'PGSC0003DMG400036280' => 'stu', 'PGSC0003DMG400036530' => 'stu', 'PGSC0003DMG400036656' => 'stu', 'PGSC0003DMG400036946' => 'stu', 'PGSC0003DMG400036951' => 'stu', 'PGSC0003DMG400037106' => 'stu', 'PGSC0003DMG400037166' => 'stu', 'PGSC0003DMG400037610' => 'stu', 'PGSC0003DMG400037617' => 'stu', 'PGSC0003DMG400037891' => 'stu', 'PGSC0003DMG400038123' => 'stu', 'PGSC0003DMG400038336' => 'stu', 'PGSC0003DMG400038341' => 'stu', 'PGSC0003DMG400038422' => 'stu', 'PGSC0003DMG400038470' => 'stu', 'PGSC0003DMG400038521' => 'stu', 'PGSC0003DMG400038901' => 'stu', 'PGSC0003DMG400039211' => 'stu', 'PGSC0003DMG400039457' => 'stu', 'PGSC0003DMG400039644' => 'stu', 'PGSC0003DMG400039889' => 'stu', 'PGSC0003DMG400039977' => 'stu', 'PGSC0003DMG400040027' => 'stu', 'PGSC0003DMG400040064' => 'stu', 'PGSC0003DMG400040261' => 'stu', 'PGSC0003DMG400040479' => 'stu', 'PGSC0003DMG400040842' => 'stu', 'PGSC0003DMG400040894' => 'stu', 'PGSC0003DMG400040970' => 'stu', 'PGSC0003DMG400041074' => 'stu', 'PGSC0003DMG400041388' => 'stu', 'PGSC0003DMG400041395' => 'stu', 'PGSC0003DMG400041401' => 'stu', 'PGSC0003DMG400041859' => 'stu', 'PGSC0003DMG400042147' => 'stu', 'PGSC0003DMG400042401' => 'stu', 'PGSC0003DMG400042885' => 'stu', 'PGSC0003DMG400042932' => 'stu', 'PGSC0003DMG400043062' => 'stu', 'PGSC0003DMG400043272' => 'stu', 'PGSC0003DMG400043341' => 'stu', 'PGSC0003DMG400043528' => 'stu', 'PGSC0003DMG400043900' => 'stu', 'PGSC0003DMG400044260' => 'stu', 'PGSC0003DMG400044453' => 'stu', 'PGSC0003DMG400044693' => 'stu', 'PGSC0003DMG400044956' => 'stu', 'PGSC0003DMG400045199' => 'stu', 'PGSC0003DMG400045315' => 'stu', 'PGSC0003DMG400045451' => 'stu', 'PGSC0003DMG400045608' => 'stu', 'PGSC0003DMG400045976' => 'stu', 'PGSC0003DMG400046019' => 'stu', 'PGSC0003DMG400046352' => 'stu', 'PGSC0003DMG400046627' => 'stu', 'PGSC0003DMG400046681' => 'stu', 'PGSC0003DMG400046752' => 'stu', 'PGSC0003DMG400046917' => 'stu', 'PGSC0003DMG400047106' => 'stu', 'Phvul.001G149400' => 'pvu', 'Phvul.003G093100' => 'pvu', 'Phvul.006G154200' => 'pvu', 'Phvul.007G028100' => 'pvu', 'Phvul.007G170100' => 'pvu', 'Phvul.008G005300' => 'pvu', 'Phvul.011G091500' => 'pvu', 'Potri.004G150900' => 'ptr', 'Potri.008G033300' => 'ptr', 'Potri.008G121500' => 'ptr', 'Potri.008G202200' => 'ptr', 'Potri.009G147600' => 'ptr', 'Potri.010G030500' => 'ptr', 'Potri.010G123801' => 'ptr', 'Potri.014G139300' => 'ptr', 'Prupe.1G150800' => 'ppe', 'Prupe.1G151100' => 'ppe', 'Prupe.1G312400' => 'ppe', 'Prupe.5G047700' => 'ppe', 'Prupe.6G120800' => 'ppe', 'Prupe.8G243600' => 'ppe', 'Psat1g183640' => 'psa', 'Psat3g125200' => 'psa', 'Psat3g125240' => 'psa', 'Psat3g125360' => 'psa', 'Psat4g032320' => 'psa', 'Psat6g060960' => 'psa', 'Psat6g226640' => 'psa', 'Psat7g189920' => 'psa', 'PSO063G5793' => 'pso', 'PSO170G4018' => 'pso', 'PSO210G6095' => 'pso', 'PSO384G2996' => 'pso', 'PSO384G3251' => 'pso', 'PSO407G0415' => 'pso', 'PSO421G0542' => 'pso', 'PSO443G0071' => 'pso', 'PSO832G0603' => 'pso', 'QL01p013431' => 'qlo', 'QL01p041319' => 'qlo', 'QL06p005289' => 'qlo', 'QL12p022357' => 'qlo', 'QL12p022512' => 'qlo', 'RcHm_v2.0_Chr4g0418401' => 'rch', 'RcHm_v2.0_Chr4g0435021' => 'rch', 'RcHm_v2.0_Chr5g0029421' => 'rch', 'RcHm_v2.0_Chr5g0055011' => 'rch', 'RcHm_v2.0_Chr6g0291431' => 'rch', 'RcHm_v2.0_Chr6g0308751' => 'rch', 'Rhsim01G0207200' => 'rsi', 'Rhsim02G0019800' => 'rsi', 'Rhsim04G0207300' => 'rsi', 'Rhsim05G0076300' => 'rsi', 'Rhsim09G0107100' => 'rsi', 'Rhsim13G0023400' => 'rsi', 'Sabra04G0100400' => 'sbr', 'Sabra08G0092300' => 'sbr', 'Sabra08G0159300' => 'sbr', 'Sabra09G0113800' => 'sbr', 'Sabra09G0116300' => 'sbr', 'Sabra10G0011100' => 'sbr', 'Sabra14G0105000' => 'sbr', 'SalBow2G1832' => 'sbo', 'SalBow2G3631' => 'sbo', 'SalBow3G2884' => 'sbo', 'SalBow4G2173' => 'sbo', 'SalBow5G5536' => 'sbo', 'SalBow6G3775' => 'sbo', 'SalBow7G2121' => 'sbo', 'SalBow8G0155' => 'sbo', 'SalBow8G1194' => 'sbo', 'Sc04g0006320' => 'sci', 'Sc08g0000320' => 'sci', 'Sc13g0003940' => 'sci', 'Sc19g0004570' => 'sci', 'Sc21g0004740' => 'sci', 'Sc21g0004750' => 'sci', 'Sed0000411' => 'sed', 'Sed0001970' => 'sed', 'Sed0005172' => 'sed', 'Sed0006078' => 'sed', 'Sed0008433' => 'sed', 'Sed0009574' => 'sed', 'Sed0011696' => 'sed', 'Sed0011853' => 'sed', 'Sed0014015' => 'sed', 'Sed0014669' => 'sed', 'Sed0019077' => 'sed', 'Sed0020112' => 'sed', 'Sed0020256' => 'sed', 'Sed0020951' => 'sed', 'Sed0023377' => 'sed', 'Sed0027215' => 'sed', 'Sed0028204' => 'sed', 'SEGI_00374' => 'sgi', 'SEGI_15838' => 'sgi', 'SGA_v2.0_scaffold11G05801' => 'sas', 'SGA_v2.0_scaffold14G06874' => 'sas', 'SGA_v2.0_scaffold166G38377' => 'sas', 'SGA_v2.0_scaffold27G11624' => 'sas', 'SGA_v2.0_scaffold38G14937' => 'sas', 'SGA_v2.0_scaffold39G15369' => 'sas', 'SGA_v2.0_scaffold5409G54639' => 'sas', 'SHI06113' => 'shi', 'SHI26280' => 'shi', 'Solyc01g080150.3' => 'sly', 'Solyc04g007240.1' => 'sly', 'Solyc05g009410.3' => 'sly', 'Solyc08g061680.3' => 'sly', 'Solyc08g061690.3' => 'sly', 'Solyc08g061695.1' => 'sly', 'Solyc08g061710.3' => 'sly', 'Solyc08g061720.1' => 'sly', 'Solyc08g061730.3' => 'sly', 'Solyc08g061740.3' => 'sly', 'Solyc08g061750.1' => 'sly', 'Solyc08g061755.1' => 'sly', 'Solyc08g061770.1' => 'sly', 'Solyc08g061780.3' => 'sly', 'Solyc08g061790.3' => 'sly', 'Solyc09g064910.1' => 'sly', 'Solyc11g018855.1' => 'sly', 'Solyc11g019850.1' => 'sly', 'Solyc11g019860.3' => 'sly', 'Solyc11g019870.3' => 'sly', 'Solyc11g019880.3' => 'sly', 'Solyc11g019890.3' => 'sly', 'Solyc11g019900.1' => 'sly', 'Solyc11g020360.3' => 'sly', 'Solyc11g020365.1' => 'sly', 'Solyc11g020370.1' => 'sly', 'Solyc11g020380.3' => 'sly', 'Solyc11g020390.1' => 'sly', 'Solyc11g020400.1' => 'sly', 'Solyc11g020420.1' => 'sly', 'Solyc11g020430.3' => 'sly', 'Solyc11g020433.1' => 'sly', 'Solyc11g020437.1' => 'sly', 'Solyc11g020500.3' => 'sly', 'Solyc11g020507.1' => 'sly', 'Solyc11g020510.1' => 'sly', 'Solyc11g020520.3' => 'sly', 'Solyc11g027933.1' => 'sly', 'Solyc11g027937.1' => 'sly', 'Solyc11g027980.3' => 'sly', 'Solyc11g028210.1' => 'sly', 'Solyc11g028213.1' => 'sly', 'Solyc11g030555.1' => 'sly', 'Solyc11g030557.1' => 'sly', 'Solyc11g030560.1' => 'sly', 'Solyc11g061780.2' => 'sly', 'Solyc11g061785.1' => 'sly', 'Solyc11g061790.1' => 'sly', 'Solyc11g061800.1' => 'sly', 'Solyc11g061810.3' => 'sly', 'Solyc11g061813.1' => 'sly', 'Solyc11g061817.1' => 'sly', 'Solyc11g061830.1' => 'sly', 'Solyc11g061835.1' => 'sly', 'Solyc11g061840.1' => 'sly', 'Solyc11g061850.1' => 'sly', 'Solyc11g061855.1' => 'sly', 'Solyc11g061860.1' => 'sly', 'Solyc11g061870.3' => 'sly', 'Solyc11g061880.1' => 'sly', 'Solyc11g061890.3' => 'sly', 'Solyc11g061900.1' => 'sly', 'Solyc11g061910.1' => 'sly', 'Solyc11g061920.3' => 'sly', 'Solyc11g063460.2' => 'sly', 'Solyc11g063470.1' => 'sly', 'Solyc11g063650.1' => 'sly', 'Solyc11g063670.1' => 'sly', 'Solyc11g063680.1' => 'sly', 'Solyc11g063690.3' => 'sly', 'Solyc11g063700.1' => 'sly', 'Solyc11g063710.1' => 'sly', 'Solyc11g063730.3' => 'sly', 'Solyc11g063740.3' => 'sly', 'Solyc11g066960.3' => 'sly', 'Solyc11g150108.1' => 'sly', 'Solyc11g150109.1' => 'sly', 'Solyc11g150118.1' => 'sly', 'Solyc11g150120.1' => 'sly', 'Solyc11g150121.1' => 'sly', 'Solyc11g150124.1' => 'sly', 'Solyc11g150125.1' => 'sly', 'Sopen00g005920' => 'spe', 'Sopen01g031930' => 'spe', 'Sopen04g002300' => 'spe', 'Sopen05g005210' => 'spe', 'Sopen05g005220' => 'spe', 'Sopen09g026610' => 'spe', 'Sopen11g009990' => 'spe', 'Sopen11g010000' => 'spe', 'Sopen11g012340' => 'spe', 'Sopen11g023710' => 'spe', 'Sopen11g023930' => 'spe', 'Sopen11g026680' => 'spe', 'Sp1g22810' => 'spa', 'Sp3g17230' => 'spa', 'Sp3g21320' => 'spa', 'Sp4g10590' => 'spa', 'Sp5g00430' => 'spa', 'Sp5g23530' => 'spa', 'Sp6g25340' => 'spa', 'Sp7g22640' => 'spa', 'TAR362G0655' => 'tar', 'TAR365G0724' => 'tar', 'TAR374G1435' => 'tar', 'TAR622G1106' => 'tar', 'TAR628G1523' => 'tar', 'TAR629G0918' => 'tar', 'TAR629G1368' => 'tar', 'TAR633G0117' => 'tar', 'TAR633G1306' => 'tar', 'TAR636G2979' => 'tar', 'THA.LOC104800550' => 'tha', 'THA.LOC104802229' => 'tha', 'THA.LOC104817551' => 'tha', 'THA.LOC104820104' => 'tha', 'THA.LOC104822228' => 'tha', 'THA.LOC104822312' => 'tha', 'THA.LOC104824559' => 'tha', 'Thecc.01G282600' => 'tca', 'Thecc.02G181400' => 'tca', 'Thecc.02G208100' => 'tca', 'Thecc.02G228000' => 'tca', 'Thecc.02G299100' => 'tca', 'Thecc.02G299200' => 'tca', 'Thecc.02G302400' => 'tca', 'Thecc.04G063200' => 'tca', 'Thecc.04G221200' => 'tca', 'Thecc.06G049800' => 'tca', 'Thecc.09G276800' => 'tca', 'Thecc.09G290100' => 'tca', 'Thhalv10006499m.g' => 'esa', 'Thhalv10009876m.g' => 'esa', 'Thhalv10015859m.g' => 'esa', 'Thhalv10016598m.g' => 'esa', 'Thhalv10019632m.g' => 'esa', 'Thhalv10022241m.g' => 'esa', 'Thhalv10022249m.g' => 'esa', 'Thhalv10026816m.g' => 'esa', 'TPR.G14193' => 'tpr', 'TPR.G15581' => 'tpr', 'TPR.G1569' => 'tpr', 'TPR.G18810' => 'tpr', 'TPR.G20132' => 'tpr', 'TPR.G34560' => 'tpr', 'TPR.G9723' => 'tpr', 'TWI09G1353' => 'twi', 'TWI14G1291' => 'twi', 'TWI31G0082' => 'twi', 'TWI31G1186' => 'twi', 'TWI53G1481' => 'twi', 'TWI59G0382' => 'twi', 'TWI79G0254' => 'twi', 'unitig_0.g1208' => 'ugi', 'unitig_0.g1485' => 'ugi', 'unitig_27.g25187' => 'ugi', 'unitig_52.g17132' => 'ugi', 'unitig_578.g16348' => 'ugi', 'unitig_578.g16349' => 'ugi', 'unitig_61.g26329' => 'ugi', 'unitig_747.g21951' => 'ugi', 'unitig_8.g3437' => 'ugi', 'vmacro02555' => 'vma', 'vmacro08273' => 'vma', 'vmacro14361' => 'vma', 'vmacro15302' => 'vma', 'vmacro19439' => 'vma', 'VMungo0540G1816' => 'vmu', 'VMungo0720G2349' => 'vmu', 'VMungo0720G2673' => 'vmu', 'VMungo1127G1578' => 'vmu', 'VMungo1215G2705' => 'vmu', 'VMungo1383G1070' => 'vmu', 'VMungo1383G2384' => 'vmu', 'Zm00001eb062030' => 'zma', 'Zm00001eb084710' => 'zma', 'Zm00001eb095250' => 'zma', 'Zm00001eb131660' => 'zma', 'Zm00001eb139980' => 'zma', 'Zm00001eb156350' => 'zma', 'Zm00001eb212350' => 'zma', 'Zm00001eb294970' => 'zma', 'Zm00001eb360550' => 'zma' ) $gf_id = 'HOM05D000613' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000613' ) $data_identifier = 'HOM05D000613' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 7, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 10, 'bca' => (int) 22, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 13, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 17, 'fan' => (int) 28, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 24, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 11, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 78, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 17, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 2, 'sly' => (int) 82, 'spe' => (int) 12, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 12, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360550' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1